Matlab pbs script

http://hpcc.stanford.edu/clusters/biomonkey/matlab_pbs.html


#!/bin/bash

#PBS -N MATLAB

#PBS -e ../pbsfiles/MATLAB.err

#PBS -o ../pbsfiles/MATLAB.out

#PBS -m aeb

### PBS -M alice@domain.edu

#PBS -l nodes=1:ppn=1

#PBS -l walltime=30:00:00

PBS_O_WORKDIR=$PATHTOWORKINGDIRECTORY
export PBS_O_WORKDIR

### ---------------------------------------
### BEGINNING OF EXECUTION
### ---------------------------------------

echo The master node of this job is `hostname`
echo The working directory is `echo $PBS_O_WORKDIR`
echo This job runs on the following nodes:
echo `cat $PBS_NODEFILE`

### end of information preamble

cd $PBS_O_WORKDIR
cmd="nohup matlab -nodisplay -nojvm -r $SCRIPTNAME >> $FILENAME"
echo "running $cmd in directory "`pwd`
$cmd >> $PBS_O_WORKDIR/log.$FILENAME

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