oneapi安装CMAQ

ISO：centos7.9

安装依赖如下：

1. 安装Intel编译器

2. 安装 mpich

3. 安装 zlib

4. 安装 curl

5. 安装 netcdf

6. 安装 ioapi

7. 安装 CMAQ

1. 安装Intel编译器

wget https://registrationcenter-download.intel.com/akdlm/irc_nas/18673/l_BaseKit_p_2022.2.0.262_offline.sh

wget https://registrationcenter-download.intel.com/akdlm/irc_nas/18679/l_HPCKit_p_2022.2.0.191_offline.sh

先装BaseKit在装HCP

安装教程看intel2022手册

安装完成后执行环境：

source /share/app/intel/oneapi/setvars.sh

2. 安装 mpich

563
wget https://www.mpich.org/static/downloads/3.4.2/mpich-3.4.2.tar.gz
564
ls
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tar xf mpich-3.4.2.tar.gz
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ls
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cd ../app/
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mkdir mpich-3.4.2
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cd mpich-3.4.2/
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pwd
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cd ../../install/mpich-3.4.2
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ls
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CC=icc CXX=icc FC=ifort CPP='icpc -E' CPPFLAGS='-fPIC' ./configure --prefix=/share/app/mpich-3.4.2/ --with-device=ch3
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make -j 2 && make install -j 2
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vi /root/.bashrc
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export PATH=/share/app/mpich-3.4.2/bin:$PATH
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echo "export PATH=/share/app/mpich-3.4.2/bin:$PATH" >> /root/.bashrc 

3. 安装 zlib

580
wget http://www.zlib.net/fossils/zlib-1.2.11.tar.gz
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ls
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tar xf zlib-1.2.11.tar.gz
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ls
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cd zlib-1.2.11
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ls
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cd ../../app/
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mkdir zlib-1.2.11
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cd zlib-1.2.11/
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pwd
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cd ../../install/zlib-1.2.11
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CC=icc CXX=icc FC=ifort CPP='icpc -E' CPPFLAGS='-fPIC' ./configure --prefix=/share/app/zlib-1.2.11/
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make -j 2 && make install -j 2

4. 安装 curl

596
wget https://curl.se/download/curl-7.77.0.tar.gz --no-check-certificate
597
ls
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tar xf curl-7.77.0.tar.gz
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cd ../app/
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cd ../install/
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ls
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cd ../app/
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mkdir curl-7.77.0
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cd curl-7.77.0/
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pwd
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cd ../../install/curl-7.77.0
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CC=icc CXX=icc FC=ifort CPP='icpc -E' CPPFLAGS='-fPIC' ./configure --prefix=/home/rain/Build_CMAQ/LIBRARIES/curl --with-zlib=/home/rain/Build_CMAQ/LIBRARIES/zlib --without-ssl
608
CC=icc CXX=icc FC=ifort CPP='icpc -E' CPPFLAGS='-fPIC' ./configure --prefix=/share/app/curl-7.77.0/ --with-zlib=/share/app/zlib-1.2.11/ --without-ssl
609
make -j 2 && make install -j 2

5. 安装 netcdf

612
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-c-4.8.0.tar.gz
613
wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-4.5.3.tar.gz
614
ls
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tar xf netcdf-c-4.8.0.tar.gz
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tar xf netcdf-fortran-4.5.3.tar.gz
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ls
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cd ../app/
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mkdir netcdf
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cd netcdf
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pwd
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cd ..
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ls
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cd ../install/
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cd netcdf-c-4.8.0
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CC=icc CXX=icc FC=ifort CPP='icpc -E' CPPFLAGS="-fPIC -I/share/app/curl-7.77.0/include" LDFLAGS="-L/share/app/curl-7.77.0/lib" ./configure --prefix=/share/app/netcdf --disable-dap --disable-netcdf-4
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make -j 2 && make install -j 2

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cd ..
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ls
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cd netcdf-fortran-4.5.3
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CC=icc CXX=icc FC=ifort CPP='icpc -E' CPPFLAGS="-fPIC -I/share/app/netcdf/include" LDFLAGS="-L/share/app/netcdf/lib" LD_LIBRARY_PATH="/share/app/netcdf/lib:$LD_LIBRARY_PATH" ./configure --prefix=/share/app/netcdf/
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make -j 2 && make install -j 2
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export PATH=/share/app/netcdf/bin:$PATH
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export NETCDF=/share/app/netcdf
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export LD_LIBRARY_PATH=/share/app/netcdf/lib:$LD_LIBRARY_PATH
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echo "export PATH=/share/app/netcdf/bin:$PATH" >> /root/.bashrc
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echo "export NETCDF=/share/app/netcdf" >> /root/.bashrc
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echo "export LD_LIBRARY_PATH=/share/app/netcdf/lib:$LD_LIBRARY_PATH" >> /root/.bashrc

6. 安装 ioapi

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wget https://www.cmascenter.org/ioapi/download/ioapi-3.2.tar.gz
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ls
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mkdir ioapi
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cd ioapi
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tar xf ../ioapi-3.2.tar.gz
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export BIN=Linux2_x86_64ifort
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mkdir Linux2_x86_64ifort
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ln -s /share/app/netcdf/lib/*.so Linux2_x86_64ifort/
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cp ioapi/Makefile.nocpl ioapi/Makefile
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cp m3tools/Makefile.nocpl m3tools/Makefile
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cp Makefile.template Makefile
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vi Makefile
BIN
= Linux2_x86_64ifort
BASEDIR
= ${PWD}
INSTALL
= /share/app/ioapi
LIBINST
= $(INSTALL)/$(BIN)
BININST
= $(INSTALL)/$(BIN)
CPLMODE
= nocpl
IOAPIDEFS
=
PVMINCL
=

669
vi ioapi/Makeinclude.Linux2_x86_64ifort
AR
= ar
CC
= mpiicc
CXX
= mpiicpc
FC
= mpiifort -auto -warn notruncated_source -static-intel
M4
= m4
LINK = $(CC)
OMPFLAGS
= -qopenmp
# for Intel compilers, version 15 or earlier
OMPLIBS
= -qopenmp
#ARCHLIB
= -Bstatic
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make configure

724
vi ioapi/Makefile
BASEDIR = /share/install/ioapi
INSTDIR = /share/app/ioapi/Linux2_x86_64ifort
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vi m3tools/Makefile
BASEDIR = /share/install/ioapi
SRCDIR
= ${BASEDIR}/m3tools
IODIR
= ${BASEDIR}/ioapi
OBJDIR
= ${BASEDIR}/${BIN}
INSTDIR = /share/app/ioapi/Linux2_x86_64ifort
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make all
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make install
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cp ioapi/fixed_src/* Linux2_x86_64ifort/
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cp ioapi/fixed_src/* /share/app/ioapi/Linux2_x86_64ifort/

7. 安装 CMAQ

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wget https://codeload.github.com/USEPA/CMAQ/tar.gz/refs/tags/CMAQv5.3.3_17Aug2021
732
tar xf CMAQ-CMAQv5.3.3_17Aug2021.tar.gz
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ls
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cd ../app/
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mkdir CMAQ-5.3.3
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cd ../../install/CMAQ-CMAQv5.3.3_17Aug2021
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ls
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cp bldit_project.csh bldit_project.csh.old
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vi bldit_project.csh
set CMAQ_HOME =
/share/app/CMAQ-5.3.3/
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./bldit_project.csh
#提示没有csh，就yum install安装一个csh
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cd /share/app/CMAQ-5.3.3/
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ls
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$ cp config_cmaq.csh config_cmaq.csh.old
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cp config_cmaq.csh config_cmaq.csh.old

 783
vi config_cmaq.csh
#> I/O API, netCDF, and MPI library locations
setenv IOAPI_INCL_DIR
/share/install/ioapi/ioapi/fixed_src
#> I/O API include header files
setenv IOAPI_LIB_DIR
/share/app/ioapi/Linux2_x86_64ifort
#> I/O API libraries
if ( $NETCDF == "netcdf_combined_directory_path" ) then
setenv NETCDF_LIB_DIR
/share/app/netcdf/lib
#> netCDF C directory path
setenv NETCDF_INCL_DIR
/share/app/netcdf/include
#> netCDF C directory path
setenv NETCDFF_LIB_DIR
/share/app/netcdf/lib
#> netCDF Fortran directory path
setenv NETCDFF_INCL_DIR /share/app/netcdf/include
#> netCDF Fortran directory path
endif
setenv MPI_INCL_DIR
/share/app/mpich-3.4.2/include
#> MPI Include directory path
setenv MPI_LIB_DIR
/share/app/mpich-3.4.2/lib
#> MPI Lib directory path
setenv myLINK_FLAG "-qopenmp"

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./config_cmaq.csh intel
785
ls
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cd CCTM/scripts/
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ls
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mkdir BLD_CCTM_v532_intel
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cp /share/app/mpich-3.4.2/include/* BLD_CCTM_v532_intel/
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./bldit_cctm.csh intel
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ls -al BLD_CCTM_v533_intel/CCTM_*.exe
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./CCTM_v533.exe

[root@ceshi BLD_CCTM_v533_intel]# ./CCTM_v533.exe

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